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Report for Sequence Feature Glyma03g32451

Feature Type:gene_model
Chromosome:Gm03
Start:40188452
stop:40193056
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g32451
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G33310AT Annotation by Michelle Graham. TAIR10: auxin-induced protein 13 | chr2:14114569-14115757 REVERSE LENGTH=247 SoyBaseE_val: 8.00E-52ISS
GO:0000394GO-bp Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009086GO-bp Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process SoyBaseN/AISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0010583GO-bp Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PF02309PFAM AUX/IAA family JGI ISS
UniRef100_D9ZIN3UniRef Annotation by Michelle Graham. Most informative UniRef hit: ARF domain class transcription factor n=1 Tax=Malus x domestica RepID=D9ZIN3_MALDO SoyBaseE_val: 1.00E-67ISS
UniRef100_UPI0002336E72UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002336E72 related cluster n=1 Tax=unknown RepID=UPI0002336E72 SoyBaseE_val: 2.00E-148ISS

Expression Patterns of Glyma03g32451
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g32451 not represented in the dataset
Glyma03g32451 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g32451
ParalogEvidenceComments
Glyma19g35180 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g32451 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g167400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g32451
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma03g32451
>Glyma03g32451.2   sequence type=transcript   gene model=Glyma03g32451   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAACGCCAGGTGGCATGAAGGATGCAGGAAACGTAGCATGAAAACGATCGACAAGAACATGGTATATTTTCCCTGAACTTTGTCTTGTCGGGATGTCTTATATGGGTGTGTGGGTCCTACCGCACTCGCTAGTTACAAGCAACCACTTCTTCTACTGAGAAGAAGTCTTGTTATTGCTTCCCCTTGATCCATGAGGTTGGAGGGACAAGACAAGAATGATGAACACGTGTCCCACACGCTCATGAGTCTGTCTAAGACTCTTGTTAACCACGCCACTTTTCTTCTTCTTGATATTCCCTCACTTCACTTCACTCTTGACAACTTGAGACTTGAGAGCGGAGAAGGCTCTTCAATTCAATGTCTAAAGATGACAACTCTTCTTCACTGGATTCTTCTTCTTCTGACCTTCAATTATCTCTCTCTTTAACACTCTCTCCCTATGCCACCACTTCTTCTCCTTCATCTATTTCTCATTCCTGTTCTGCTGCTCTTGCCACCGCTGCCAGTCAAGTTGTTGGATGGCCTCCCCTTGGAGCATATAGAATGAATATCTATAATAGCCAGGCAAAATCACCAGCCACAGAAGTATTCAATTCTACAGTTGACAACAAAAGAGCAAGCAATAGTACTGGGGTTAGGAAGACTGCAGATGGTGGCAGTGATAGTAGCAACATTATTTTCAAAGAAAAAGGAAACCTCAGGAGTTCCCTGTTTGTGAAAGTAAAAATGGATGGGATACCAATTGGAAGGAAGGTTGATTTAGGTGCTCATGGTTCCTATGAAACCTTAGCTCAAACCTTGGAGGATATGTTTGATGAATCAGCTACAGTCCTCACTCACAAAGGATCAAATGGAGAAGATCACGGTACTGAAGTTGGAGCAGATGGGCATTCAAAATTGCTGCATGGTTCTTCTGACCTTGTGCTCACTTATGAAGACAAGGAAGGAGACTGGATGCTTGTGGGAGATGTTCCTTGGTGGATGTTCCTTAACTCTGTGAGGAGGCTAAGAATCATGAGGACACCTGAAGCTAATGGACTTGCCCCAAGATTGAAGGAAAAGAACAGAAGATCGAAATGCAAGCTCATATAGATAATGTTATTGTTTGCACCTTTACATGTGCTAGGATACACAAAACTTATGAACTAAAATGTACAACACGAATTGAAGGAATATAAATGGGAGAAAAAACAGAAAGAGGAAAGTTAAGTAATACTGCGAGTAATGGATTTTGATTTTAAATGATCAAACCTCGTTTTTTTTTATTCAATTGAAATGGTGTTTGTTTAATTTCTCTTGGTATATCACTTAAAAGGCACAGGCGGCATAAATTTTCATGTAATATTTTGTCATATAAGGCACTGCTATTTGTTAATAATGTAAACATGAGATGTGTTTGCTAGCTTTCTATCAATTTTTTATTGCCATCTCTTTCCCTGCTATTGTATTTCGAATTTTCAGTTGAAATAAGAGCTGTTTTCCCTGTTTTGGGAACCGTTGCTTTAAATT
Coding sequences of Glyma03g32451
>Glyma03g32451.1   sequence type=CDS   gene model=Glyma03g32451   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTAAAGATGACAACTCTTCTTCACTGGATTCTTCTTCTTCTGACCTTCAATTATCTCTCTCTTTAACACTCTCTCCCTATGCCACCACTTCTTCTCCTTCATCTATTTCTCATTCCTGTTCTGCTGCTCTTGCCACCGCTGCCAGTCAAGTTGTTGGATGGCCTCCCCTTGGAGCATATAGAATGAATATCTATAATAGCCAGGCAAAATCACCAGCCACAGAAGTATTCAATTCTACAGTTGACAACAAAAGAGCAAGCAATAGTACTGGGGTTAGGAAGACTGCAGATGGTGGCAGTGATAGTAGCAACATTATTTTCAAAGAAAAAGGAAACCTCAGGAGTTCCCTGTTTGTGAAAGTAAAAATGGATGGGATACCAATTGGAAGGAAGGTTGATTTAGGTGCTCATGGTTCCTATGAAACCTTAGCTCAAACCTTGGAGGATATGTTTGATGAATCAGCTACAGTCCTCACTCACAAAGTAGGATCAAATGGAGAAGATCACGGTACTGAAGTTGGAGCAGATGGGCATTCAAAATTGCTGCATGGTTCTTCTGACCTTGTGCTCACTTATGAAGACAAGGAAGGAGACTGGATGCTTGTGGGAGATGTTCCTTGGTGGATGTTCCTTAACTCTGTGAGGAGGCTAAGAATCATGAGGACACCTGAAGCTAATGGACTTGCCCCAAGATTGAAGGAAAAGAACAGAAGATCGAAATGCAAGCTCATATAG

>Glyma03g32451.2   sequence type=CDS   gene model=Glyma03g32451   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTAAAGATGACAACTCTTCTTCACTGGATTCTTCTTCTTCTGACCTTCAATTATCTCTCTCTTTAACACTCTCTCCCTATGCCACCACTTCTTCTCCTTCATCTATTTCTCATTCCTGTTCTGCTGCTCTTGCCACCGCTGCCAGTCAAGTTGTTGGATGGCCTCCCCTTGGAGCATATAGAATGAATATCTATAATAGCCAGGCAAAATCACCAGCCACAGAAGTATTCAATTCTACAGTTGACAACAAAAGAGCAAGCAATAGTACTGGGGTTAGGAAGACTGCAGATGGTGGCAGTGATAGTAGCAACATTATTTTCAAAGAAAAAGGAAACCTCAGGAGTTCCCTGTTTGTGAAAGTAAAAATGGATGGGATACCAATTGGAAGGAAGGTTGATTTAGGTGCTCATGGTTCCTATGAAACCTTAGCTCAAACCTTGGAGGATATGTTTGATGAATCAGCTACAGTCCTCACTCACAAAGGATCAAATGGAGAAGATCACGGTACTGAAGTTGGAGCAGATGGGCATTCAAAATTGCTGCATGGTTCTTCTGACCTTGTGCTCACTTATGAAGACAAGGAAGGAGACTGGATGCTTGTGGGAGATGTTCCTTGGTGGATGTTCCTTAACTCTGTGAGGAGGCTAAGAATCATGAGGACACCTGAAGCTAATGGACTTGCCCCAAGATTGAAGGAAAAGAACAGAAGATCGAAATGCAAGCTCATATAG
Predicted protein sequences of Glyma03g32451
>Glyma03g32451.1   sequence type=predicted peptide   gene model=Glyma03g32451   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSKDDNSSSLDSSSSDLQLSLSLTLSPYATTSSPSSISHSCSAALATAASQVVGWPPLGAYRMNIYNSQAKSPATEVFNSTVDNKRASNSTGVRKTADGGSDSSNIIFKEKGNLRSSLFVKVKMDGIPIGRKVDLGAHGSYETLAQTLEDMFDESATVLTHKVGSNGEDHGTEVGADGHSKLLHGSSDLVLTYEDKEGDWMLVGDVPWWMFLNSVRRLRIMRTPEANGLAPRLKEKNRRSKCKLI*

>Glyma03g32451.2   sequence type=predicted peptide   gene model=Glyma03g32451   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSKDDNSSSLDSSSSDLQLSLSLTLSPYATTSSPSSISHSCSAALATAASQVVGWPPLGAYRMNIYNSQAKSPATEVFNSTVDNKRASNSTGVRKTADGGSDSSNIIFKEKGNLRSSLFVKVKMDGIPIGRKVDLGAHGSYETLAQTLEDMFDESATVLTHKGSNGEDHGTEVGADGHSKLLHGSSDLVLTYEDKEGDWMLVGDVPWWMFLNSVRRLRIMRTPEANGLAPRLKEKNRRSKCKLI*






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